The machinery analogue of [get_gift_reactions()] and
[get_reaction_systems()]. A structural, regulatory or defense GIFT is
complete when at least one of its curated implementations – an
architecture, a circuit, a defense mechanism – has every required function
supported, so this returns that hierarchy in one long-form table:
implementation, function, system, component and accepted marker.
Usage
get_gift_machinery(gift_id, db = NULL)
Arguments
- gift_id
Stable GIFT identifier.
- db
Optional open gifter database connection.
Value
A long-form tibble. The implementation column is named for the GIFT
type: `architecture_id`, `circuit_id` or `mechanism_id`. Calling this on a
metabolic GIFT is an error, because a metabolic GIFT has routes instead.
Details
Reading it: implementations are alternatives (OR), the required functions of
one implementation are jointly needed (AND), the systems of one function are
alternatives (OR), the components of one system are jointly needed (AND),
and the markers of one component are alternatives (OR).
