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Trace the evidence chain for a GIFT call

Source: R/evaluation.R
trace_gift.Rd

Traceability follows the completeness model that produced the call. For a metabolic GIFT the chain runs route -> reaction -> enzyme system -> component -> marker -> gene; for a structural, regulatory or defense GIFT it runs architecture, circuit or mechanism -> function -> system -> component -> marker -> gene. Both end at the supplied gene identifiers.

Usage

trace_gift(result, gift_id, route_id = NULL, implementation = NULL)

Arguments

result

A result returned by [evaluate_gifts()].

gift_id

Stable GIFT identifier.

route_id

Optional route to trace, for a metabolic GIFT. The evaluated best route is used by default.

implementation

Optional architecture, circuit or mechanism to trace, for a non-metabolic GIFT. The evaluated best one is used by default.

Value

A long-form tibble from the chosen implementation down to observed markers and genes.