A small, simulated example data set representing metagenome-assembled
genome (MAG) abundances across host samples from two groups (control and
treatment), where a block of MAGs is enriched in the treatment group so
that beta diversity is non-trivial. Generated by data-raw/make-data.R.
Format
An integer matrix with 24 rows (MAGs, mag01..mag24) and 12
columns (samples, ctrl01..ctrl06 and trt01..trt06).
Examples
hilldiv(gut_counts, q = c(0, 1, 2))
#> Computing "neutral" Hill numbers of "q0", "q1", and "q2".
#> ℹ 24 taxa across 12 samples.
#> <hilldiv3 result: neutral>
#> 36 rows x 3 cols
#>
#> q sample value
#> 1 0 ctrl01 24.000000
#> 2 1 ctrl01 12.329592
#> 3 2 ctrl01 7.991400
#> 4 0 ctrl02 24.000000
#> 5 1 ctrl02 14.784342
#> 6 2 ctrl02 11.085165
#> 7 0 ctrl03 24.000000
#> 8 1 ctrl03 11.832847
#> 9 2 ctrl03 7.013457
#> 10 0 ctrl04 23.000000
#> 11 1 ctrl04 11.266414
#> 12 2 ctrl04 6.913044
#> 13 0 ctrl05 24.000000
#> 14 1 ctrl05 10.035886
#> 15 2 ctrl05 6.197818
#> 16 0 ctrl06 24.000000
#> 17 1 ctrl06 13.277945
#> 18 2 ctrl06 9.484654
#> 19 0 trt01 24.000000
#> 20 1 trt01 11.888942
#> 21 2 trt01 8.154680
#> 22 0 trt02 24.000000
#> 23 1 trt02 8.350790
#> 24 2 trt02 4.184230
#> 25 0 trt03 24.000000
#> 26 1 trt03 15.681517
#> 27 2 trt03 12.938391
#> 28 0 trt04 23.000000
#> 29 1 trt04 11.671685
#> 30 2 trt04 8.427938
#> 31 0 trt05 23.000000
#> 32 1 trt05 9.043005
#> 33 2 trt05 5.244426
#> 34 0 trt06 23.000000
#> 35 1 trt06 10.901319
#> 36 2 trt06 7.729680